Commit Log (Page 4 of 6)

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Summary Period: 2005-06-27 to 2005-06-02 (Commits 67-116 of 266)

schmidt 2005-06-27 14:05

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172 lines of code changed in:

studioBase/src: Funcat.java (new 152), Scop.java (+20 -8)

schmidt 2005-06-26 00:46

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22 lines of code changed in:

studioBase/src/de/tum/binfo/proj/visualisation: ViewerPopupMenu.java (+15 -6), Visualisation.java (+7 -3)

schmidt 2005-06-26 00:06

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9 lines of code changed in:

studioBase/src: Scop.java (new 8)
studioBase/src/de/tum/binfo/proj/visualisation: Visualisation.java (+1)

schmidt 2005-06-24 18:45

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1 lines of code changed in:

studioBase/src/de/tum/binfo/proj/gui: EngineManager.java (+1 -1)

schmidt 2005-06-24 18:34

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315 lines of code changed in:

studioBase/src/de/tum/binfo/proj/engine: EngineResults.java (+1)
studioBase/src/de/tum/binfo/proj/visualisation: ViewerPopupMenu.java (+293 -343), Visualisation.java (+19 -2)

hager 2005-06-24 14:28

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25 lines of code changed in:

studioBase/src/de/tum/binfo/proj/gui: EngineManager.java (+20 -12)

schmidt 2005-06-21 18:46

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2 lines of code changed in:

studioBase/src/de/tum/binfo/proj/visualisation: FuncatComparePlot.java (+1 -1), FuncatComparePlotPercentMore.java (+1 -1)

schmidt 2005-06-21 17:04

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39 lines of code changed in:

studioBase/src/de/tum/binfo/proj/engine: FuncatCompare.java (+1 -1)
studioBase/src/de/tum/binfo/proj/input: IPedant.java (+15 -1)
studioBase/src/de/tum/binfo/proj/input/classes: Pedant.java (+23 -2)

schmidt 2005-06-21 16:45

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4 lines of code changed in:

studioBase/src/de/tum/binfo/proj/input: IPedant.java (+4)

schmidt 2005-06-21 16:32

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46 lines of code changed in:

studioBase/src/de/tum/binfo/proj/engine: FuncatCompare.java (+26 -8)
studioBase/src/de/tum/binfo/proj/rinterface/vis: Barplot.java (+5 -1)
studioBase/src/de/tum/binfo/proj/visualisation: FuncatComparePlot.java (+14 -11), FuncatComparePlotPercentMore.java (new 1)

schmidt 2005-06-21 14:44

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505 lines of code changed in:

studioBase/src/afilter: FilterTest.java (+4 -106)
studioBase/src/de/tum/binfo/proj/engine: FuncatCompare.java (new 8)
studioBase/src/de/tum/binfo/proj/input: IPedant.java (+101 -3)
studioBase/src/de/tum/binfo/proj/input/classes: Pedant.java (+365 -207)
studioBase/src/de/tum/binfo/proj/rinterface/vis: Barplot.java (+16)
studioBase/src/de/tum/binfo/proj/visualisation: FuncatComparePlot.java (new 11)

schmidt 2005-06-20 21:37

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1 lines of code changed in:

studioBase/src/de/tum/binfo/proj/input/classes: PedantFilter.java (+1)

schmidt 2005-06-20 19:43

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27 lines of code changed in:

studioBase/src/afilter: FilterTest.java (+27 -25)

schmidt 2005-06-20 17:28

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13 lines of code changed in:

studioBase/src/afilter: FilterTest.java (+13)

schmidt 2005-06-20 15:43

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244 lines of code changed in:

studioBase/src/afilter: FilterTest.java (+131 -31)
studioBase/src/de/tum/binfo/proj/input: IPedant.java (+17)
studioBase/src/de/tum/binfo/proj/input/classes: Pedant.java (+31 -21), PedantFilter.java (+65 -48)

schmidt 2005-06-20 13:33

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197 lines of code changed in:

studioBase/src/afilter: FilterTest.java (new 31), HighVsLowAbd.java (del)
studioBase/src/de/tum/binfo/proj/input: IPedant.java (+2)
studioBase/src/de/tum/binfo/proj/input/classes: PedantFilter.java (+164 -62)

schmidt 2005-06-19 22:18

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62 lines of code changed in:

studioBase/src/de/tum/binfo/proj/input/classes: Pedant.java (+31), PedantFilter.java (+15 -8), PedantWithFilter.java (+10)
studioBase/src/de/tum/binfo/proj/input/filter: IPedantFilter.java (+6 -1)

schmidt 2005-06-19 21:57

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387 lines of code changed in:

studioBase/src/afilter: FuncatLabel.java (new), HighVsLowAbd.java (new)
studioBase/src/de/tum/binfo/proj/input: IPedant.java (+4)
studioBase/src/de/tum/binfo/proj/input/classes: Filter.java (+18 -2), Pedant.java (+169 -143), PedantFilter.java (+185 -18), PedantWithFilter.java (+2 -1)
studioBase/src/de/tum/binfo/proj/input/filter: IFilterId.java (+9)

schmidt 2005-06-19 01:10

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183 lines of code changed in:

studioBase/src/de/tum/binfo/proj/statistic: ITest.java (+2), KS.java (+142), MannWhitney.java (+33), Test.java (+6)

schmidt 2005-06-19 00:42

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99 lines of code changed in:

studioBase/src/de/tum/binfo/proj/rinterface: RParser.java (+24 -2), RPiper.java (+45 -11), Rtest.java (+9 -1)
studioBase/src/de/tum/binfo/proj/statistic: Test.java (+7 -2)
studioBase/src/de/tum/binfo/proj/visualisation: Visualisation.java (+14 -5)

schmidt 2005-06-18 23:26

generic xml file schema,dtd and uml figure

3 lines of code changed in:

studioBase/src/de/tum/binfo/proj/engine: AaDistributionTriplets.java (+3 -4)

schmidt 2005-06-18 21:14

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11 lines of code changed in:

studioBase/src/de/tum/binfo/proj: AALetter1To3.java (del)
studioBase/src/de/tum/binfo/proj/engine: ScopClassDistribution.java (+1 -1)
studioBase/src/de/tum/binfo/proj/gui: Configuration.java (+1 -1), WindowMain.java (+2 -2)
studioBase/src/de/tum/binfo/proj/input/classes: Pedant.java (+1 -1), PedantFilter.java (+1 -1), PedantWithFilter.java (+1 -1)
studioBase/src/de/tum/binfo/proj/util: AALetter1To3.java (new), AddSeq.java (del), CheckIds.java (del), Db.java (del), DbImport.java (+2), FindPedantDbs.java (del), JarReader.java (del), QueryExpasyForTaxonomy.java (del), Routines.java (del), StringCompare.java (del), StringUtils.java (del), SwissProtConnection.java (del), Tools.java (del)
studioBase/src/de/tum/binfo/proj/visualisation: AaDistributionBoxPlot.java (+1 -1), AaDistributionHistogram.java (+1 -1)

schmidt 2005-06-18 20:38

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857 lines of code changed in:

studioBase/src/de/tum/binfo/proj: AALetter1To3.java (new), Definitions.java (del), GlobalCfg.txt (new)
studioBase/src/de/tum/binfo/proj/engine: SequencePropertiesExec.java (-2)
studioBase/src/de/tum/binfo/proj/gui: Configuration.java (+46 -40), EngineManager.java (+2 -3), GUIPreferences.java (+3 -5), GuiCfg.java (+566 -593), ResultAdmin.java (+3 -4), ResultListPopupMenu.java (+2 -3), TablePopupMenu.java (+1 -2), TestThread.java (+1 -2), WindowMain.java (+4 -5)
studioBase/src/de/tum/binfo/proj/rinterface: RCfgCheck.java (new), RPiper.java (+12 -4)
studioBase/src/de/tum/binfo/proj/statistic: Test.java (-1)
studioBase/src/de/tum/binfo/proj/util: Db.java (+203 -16), DbImport.java (+2 -65), FindPedantDbs.java (+3 -4)
studioBase/src/de/tum/binfo/proj/visualisation: AaDistributionBoxPlot.java (+2 -2), AaDistributionHistogram.java (+2 -2), ViewerPopupMenu.java (+4 -7), Visualisation.java (+1 -2)
studioBase/src/examples: Proteomics.java (-10)

schmidt 2005-06-18 17:39

no global WINDOWS variable any more. Test yourself if you are interested e.g. by using a utils methods

52 lines of code changed in:

studioBase/src/de/tum/binfo/proj: Definitions.java (+3 -3)
studioBase/src/de/tum/binfo/proj/gui: EngineManager.java (+14 -6)
studioBase/src/de/tum/binfo/proj/statistic: Test.java (+9 -3)
studioBase/src/de/tum/binfo/proj/visualisation: ViewerPopupMenu.java (+13 -4), Visualisation.java (+13 -5)

schmidt 2005-06-15 15:47

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10 lines of code changed in:

studioBase/src/de/tum/binfo/proj/input/classes: SeqProperties.java (+10 -1)

schmidt 2005-06-14 19:55

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57 lines of code changed in:

studioBase/src/de/tum/binfo/proj/rinterface/vis: Par.java (+57 -3)

schmidt 2005-06-14 18:52

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2 lines of code changed in:

studioBase/src/de/tum/binfo/proj/visualisation: Visualisation.java (+2 -2)

schmidt 2005-06-14 17:29

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7 lines of code changed in:

studioBase/src/de/tum/binfo/proj/engine: SequencePropertiesExec.java (new 2)
studioBase/src/examples: Proteomics.java (+5 -99)

hager 2005-06-14 15:31

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56 lines of code changed in:

studioBase/src/de/tum/binfo/proj/visualisation: ViewerPopupMenu.java (+56 -45)

schmidt 2005-06-14 15:16

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0 lines of code changed in:

studioBase/src/de/tum/binfo/proj/visualisation/generic: TestGenericVis.java (del), TestGenericVis2.java (del), TestScatterPlot.java (del)

hager 2005-06-14 15:16

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351 lines of code changed in:

studioBase/src/de/tum/binfo/proj/visualisation: ViewerPopupMenu.java (+344 -348), Visualisation.java (+7 -2)

schmidt 2005-06-14 15:07

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1 lines of code changed in:

studioBase/src/de/tum/binfo/proj/visualisation/generic: TestGenericVis2.java (+1 -1)

schmidt 2005-06-14 15:00

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1 lines of code changed in:

studioBase/src/de/tum/binfo/proj/visualisation/generic: TestGenericVis.java (+1)

schmidt 2005-06-14 14:07

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4 lines of code changed in:

studioBase/src/de/tum/binfo/proj/visualisation/generic: TestGenericVis.java (+1), TestGenericVis2.java (+3 -1)

schmidt 2005-06-14 14:04

unused imports weg

76 lines of code changed in:

studioBase/src/biojava/bugfixes: MassCalc.java (-1)
studioBase/src/de/tum/binfo/proj/engine: AaDistribution.java (-2), CompareNumericDistributions.java (+1), DigestTryptic.java (-3), DigestTrypticNoDoubles.java (-3), Engine.java (-3), FrequencyPlotAndMannWhitneyTest.java (-3), IEngine.java (-1)
studioBase/src/de/tum/binfo/proj/gui: Configuration.java (-1), DataTable.java (+4 -4), Engine1Thread.java (-6), Engine2Thread.java (-1), EngineManager.java (+1 -2), InputListPopupMenu.java (+1 -1), ResultListPopupMenu.java (+2 -3), RunGUI.java (-1), TablePopupMenu.java (+1 -2), TestThread.java (-1), VisualisationThread.java (-2), WindowMain.java (+2 -4)
studioBase/src/de/tum/binfo/proj/input: ISequenceSet.java (-1)
studioBase/src/de/tum/binfo/proj/input/classes: Filter.java (-3), FlatFile.java (-4), GenericXMLFile.java (-2), Input.java (-3), PedantWithFilter.java (-2), SeqProperties.java (+2 -3), SequenceSet.java (-4), XMLFile.java (+1 -2)
studioBase/src/de/tum/binfo/proj/rinterface/vis: Plot.java (+27 -1), Title.java (-1)
studioBase/src/de/tum/binfo/proj/statistic: ITest.java (-1), MannWhitney.java (-1)
studioBase/src/de/tum/binfo/proj/statistic/ext: Compare2Distributions.java (+2 -4), MannWhitneyApp.java (-1)
studioBase/src/de/tum/binfo/proj/ui: AaDialog.java (-1), DialogFactory.java (-2)
studioBase/src/de/tum/binfo/proj/util: Analyzer.java (+1 -1), DbImport.java (-1), DynamicLoading.java (-6), FindPedantDbs.java (+1 -1), StringUtils.java (+1 -1)
studioBase/src/de/tum/binfo/proj/visualisation: HydrophobicityComparePlot.java (+1 -3), LengthComparePlot.java (+1 -3), MassComparePlot.java (+1 -3), PIComparePlot.java (-3), Visualisation.java (-1)
studioBase/src/de/tum/binfo/proj/visualisation/generic: ScatterPlot.java (new), TestGenericVis.java (-2), TestGenericVis2.java (-5), TestScatterPlot.java (new), TwoBoxPlot.java (-2)
studioBase/src/examples: ExAADistributionHist.java (-2), ExAAFrequency.java (-1), ExAaDistributionAndFrequences.java (-1), ExAaDistributionAndFrequences2.java (-4), ExLengthAgainstHyphob.java (-1), ExPIAbsHist.java (+4 -4), ExPedantXMLCompare.java (-4), ExReflections.java (-2), ExReflections2.java (-2), ExScopClasses.java (-1), ExSwissProt.java (-1), Proteomics.java (+18 -14), ProteomicsTest.java (+4 -5), TestDimerDistributions.java (-3), TestDimerDistributionsGenome.java (-1), TestTripletDistributions.java (-3)

schmidt 2005-06-14 10:13

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4 lines of code changed in:

studioBase/src/de/tum/binfo/proj/visualisation/generic: TestGenericVis.java (+2 -2), TestGenericVis2.java (+2 -2)

schmidt 2005-06-14 00:41

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6 lines of code changed in:

studioBase/src/de/tum/binfo/proj/visualisation/generic: TestGenericVis2.java (new 6)

schmidt 2005-06-14 00:23

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411 lines of code changed in:

studioBase/src/de/tum/binfo/proj/engine: CompareNumericDistributions.java (+328 -287)
studioBase/src/de/tum/binfo/proj/rinterface/vis: Boxplot.java (new 1)
studioBase/src/de/tum/binfo/proj/statistic: MannWhitney.java (+64)
studioBase/src/de/tum/binfo/proj/visualisation: Viewer.java (+10 -2), Visualisation.java (+4 -2)
studioBase/src/de/tum/binfo/proj/visualisation/generic: TestGenericVis.java (new 2), TwoBoxPlot.java (new 2)

schmidt 2005-06-13 18:08

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6 lines of code changed in:

studioBase/src/de/tum/binfo/proj/rinterface/vis: Plot.java (+1)
studioBase/src/examples: ExPedant.java (+5 -4)

hager 2005-06-13 18:02

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422 lines of code changed in:

studioBase/src/de/tum/binfo/proj/gui: DataTable.java (+58 -12), ResultListPopupMenu.java (+280 -218), RunGUI.java (-1), WindowMain.java (+46 -53)
studioBase/src/de/tum/binfo/proj/ui: DialogFactory.java (+19)
studioBase/src/de/tum/binfo/proj/visualisation: ViewerPopupMenu.java (+19 -8)

schmidt 2005-06-13 09:45

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1 lines of code changed in:

studioBase/src/de/tum/binfo/proj/rinterface/vis: Plot.java (new)
studioBase/src/de/tum/binfo/proj/util: Db.java (+1)

schmidt 2005-06-08 15:39

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51 lines of code changed in:

studioBase/src/de/tum/binfo/proj/util: Db.java (+51 -160)

schmidt 2005-06-03 13:51

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0 lines of code changed in:

studioBase/src/examples: SaveArray.java (new)

schmidt 2005-06-03 13:41

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1 lines of code changed in:

studioBase/src/de/tum/binfo/proj/gui: WindowMain.java (+1 -3)

hager 2005-06-03 11:45

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94 lines of code changed in:

studioBase/src/de/tum/binfo/proj/engine: GenericXMLCompare.java (new 1), PedantXMLCompare.java (del)
studioBase/src/de/tum/binfo/proj/gui: Engine1Thread.java (+77 -100), Engine2Thread.java (+12 -4)
studioBase/src/de/tum/binfo/proj/visualisation: GenericXMLComparePlot.java (new), PedantXMLComparePlot.java (del)
studioBase/src/examples: ExPedantXMLCompare.java (+4 -4)

schmidt 2005-06-03 09:41

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0 lines of code changed in:

studioBase/src/de/tum/binfo/proj/visualisation: IVisualisation2.java (new), IVisualisationN.java (new)

schmidt 2005-06-02 22:17

Def.pathsep ersetzt durch File.seperator

57 lines of code changed in:

studioBase/src/de/tum/binfo/proj: Definitions.java (+5 -5)
studioBase/src/de/tum/binfo/proj/gui: GUIPreferences.java (+3 -3), GuiCfg.java (+6 -6), ResultAdmin.java (+2 -2), ResultListPopupMenu.java (+1 -1), TablePopupMenu.java (+2 -1), TestThread.java (+3 -1), WindowMain.java (+4 -4)
studioBase/src/de/tum/binfo/proj/ui: DialogFactory.java (+3 -1)
studioBase/src/de/tum/binfo/proj/util: DbImport.java (+3 -2)
studioBase/src/de/tum/binfo/proj/visualisation: ViewerPopupMenu.java (+5 -5), Visualisation.java (+1 -1)
studioBase/src/examples: ExAADistribution.java (+3 -1), ExAADistributionDiffPlot.java (+1 -1), ExAADistributionHist.java (+1 -1), ExAAFrequency.java (+1 -1), ExAaDistributionAndFrequences.java (+1 -1), ExAaDistributionAndFrequences2.java (+1 -1), ExLengthAgainstHyphob.java (+1 -1), ExMannWhitneyApp.java (+1 -1), ExPIAbsHist.java (+1 -1), ExPedantXMLCompare.java (+1 -1), ExShapiroApp.java (+1 -1), ExSwissProt.java (+1 -1), Proteomics.java (+2 -2), ProteomicsTest.java (+1 -1), TestDimerDistributions.java (+2 -1)

schmidt 2005-06-02 20:06

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6 lines of code changed in:

studioBase/src/examples: ExScopClasses.java (+6 -3)

schmidt 2005-06-02 20:01

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4 lines of code changed in:

studioBase/src/de/tum/binfo/proj/visualisation: ScopVisualisation.java (+4 -1)

schmidt 2005-06-02 19:54

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42 lines of code changed in:

studioBase/src/de/tum/binfo/proj/engine: PIabs.java (+10 -3)
studioBase/src/de/tum/binfo/proj/gui: Engine1Thread.java (+32 -32)

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