Commit Log (Page 6 of 6)

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Summary Period: 2005-05-23 to 2005-05-16 (Commits 1-16 of 266)

schmidt 2005-05-23 21:45

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1313 lines of code changed in:

• studioBase/src/atest: Binning.java (+548 -502), ThTest.java (+7 -5)
• studioBase/src/de/tum/binfo/proj/engine: Engine.java (+20), MassCompare.java (+139 -201)
• studioBase/src/de/tum/binfo/proj/visualisation: MassComparePlot.java (+72 -51), Visualisation.java (+2 -2)
• studioBase/src/de/tum/binfo/proj/visualisation/cfg: Par.java (+525 -251)

schmidt 2005-05-23 11:08

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561 lines of code changed in:

• studioBase/src/atest: Binning.java (+55 -3)
• studioBase/src/de/tum/binfo/proj/input: all.ucd (changed), input.ucd (changed)
• studioBase/src/de/tum/binfo/proj/visualisation/cfg: Par.java (+1 -1)

schmidt 2005-05-23 10:46

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407 lines of code changed in:

• studioBase/src/atest: Binning.java (+407 -241)

schmidt 2005-05-22 16:54

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255 lines of code changed in:

• studioBase/src/atest: Binning.java (+255 -145)

schmidt 2005-05-20 15:23

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106 lines of code changed in:

• studioBase/src/atest: Binning.java (+106 -113)

schmidt 2005-05-19 15:23

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175 lines of code changed in:

• studioBase/src/atest: Binning.java (new 174)

schmidt 2005-05-18 21:08

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8 lines of code changed in:

• studioBase/src/atest: ThTest.java (+2 -2)
• studioBase/src/de/tum/binfo/proj/engine: PIcompare.java (+2 -1)
• studioBase/src/de/tum/binfo/proj/visualisation: PIComparePlot.java (+4 -2)

schmidt 2005-05-18 20:56

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29 lines of code changed in:

• studioBase/src/atest: ThTest.java (+2 -2)
• studioBase/src/de/tum/binfo/proj/engine: MassCompare.java (+6 -11)
• studioBase/src/de/tum/binfo/proj/visualisation: MassComparePlot.java (+3 -3)
• studioBase/src/de/tum/binfo/proj/visualisation/cfg: Par.java (+18)

schmidt 2005-05-18 20:24

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181 lines of code changed in:

• studioBase/src/atest: ThTest.java (+3)
• studioBase/src/de/tum/binfo/proj/visualisation: IVisualisation.java (+11), MassComparePlot.java (-1), Visualisation.java (+20)
• studioBase/src/de/tum/binfo/proj/visualisation/cfg: Par.java (+147 -6)

schmidt 2005-05-18 19:28

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65 lines of code changed in:

• studioBase/src/atest: TestPlotCfg.java (new)
• studioBase/src/de/tum/binfo/proj/visualisation/cfg: Par.java (+46 -18), PlotSettingsHull.java (+19)

schmidt 2005-05-18 19:10

value filter and plot cfg

258 lines of code changed in:

• studioBase/src/atest: ThTest.java (+53 -8)
• studioBase/src/de/tum/binfo/proj/engine: Engine.java (+15), IEngine.java (+3 -1), MassCompare.java (+60 -32)
• studioBase/src/de/tum/binfo/proj/input: FlatFile.java (del), IPedantWithFilter.java (+2 -2), Input.java (del), Pedant.java (del), XMLFile.java (+1)
• studioBase/src/de/tum/binfo/proj/input/classes: PedantWithFilter.java (+4 -4), classes-i.ucd (changed)
• studioBase/src/de/tum/binfo/proj/input/filter: IFilter.java (del), IFilterAble.java (del), IFilterId.java (new), IFilterIdAble.java (new), IFilterValue.java (new), IFilterValueAble.java (new), IPedantFilter.java (+1 -1)
• studioBase/src/de/tum/binfo/proj/visualisation: MassComparePlot.java (new 52), PIComparePlot.java (+1 -1), Visualisation.java (+2 -2)
• studioBase/src/de/tum/binfo/proj/visualisation/cfg: BoxPlot.java (new), IPlotSettings.java (new), Par.java (new 64), PlotSettings.java (new), PlotSettingsHull.java (new)

hager 2005-05-18 17:51

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7 lines of code changed in:

• studioBase/src/de/tum/binfo/proj/visualisation: PedantXMLComparePlot.java (new 7)

schmidt 2005-05-17 18:48

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0 lines of code changed in:

• studioBase/src/de/tum/binfo/proj/input: all.ucd (changed), input.ucd (changed)

schmidt 2005-05-17 17:06

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174 lines of code changed in:

• studioBase/src/atest: ThTest.java (+108 -2)
• studioBase/src/de/tum/binfo/proj/engine: EngineResults.java (+1)
• studioBase/src/de/tum/binfo/proj/input: ISeqProperties.java (+6 -1), input.ucd (changed)
• studioBase/src/de/tum/binfo/proj/input/classes: SeqProperties.java (+14), SequenceSet.java (+8)
• studioBase/src/de/tum/binfo/proj/scales: LCRetention.java (new), Scale.java (+37)

schmidt 2005-05-17 11:13

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19 lines of code changed in:

• studioBase/src/atest: ThTest.java (+16 -11)
• studioBase/src/de/tum/binfo/proj/engine: EngineResults.java (+2 -2)
• studioBase/src/de/tum/binfo/proj/input: ISeqProperties.java (+1 -1)

schmidt 2005-05-16 21:52

*** empty log message ***

3016 lines of code changed in:

• studioBase/src: log4j.properties (new 27)
• studioBase/src/atest: ThTest.java (new 70)
• studioBase/src/biojava/bugfixes: MassCalc.java (new 1)
• studioBase/src/de/tum/binfo/proj: Definitions.java (new 3)
• studioBase/src/de/tum/binfo/proj/engine: AaDistribution.java (new 1), AaDistributionDimer.java (new 1), AaDistributionTriplets.java (new 3), AaFrequences.java (new 1), DigestTryptic.java (new 3), DigestTrypticNoDoubles.java (new 3), Engine.java (new), Engine1.java (new 1), Engine2.java (new 2), EngineResults.java (new 59), FrequencyPlotAndMannWhitneyTest.java (new 3), IEngine.java (new 1), IEngine1.java (new 1), IEngine2.java (new 1), IEngineResults.java (new 1), LengthAgainstHyphob.java (new 82), MassCompare.java (new 178), MassCompareDB.java (new), PIcompare.java (new 1), PIcompareDB.java (new), PedantXMLCompare.java (new 289), ScopClassDistribution.java (new 1)
• studioBase/src/de/tum/binfo/proj/gui: About.java (new), BSHelp.java (new), ColorRowTableCellRenderer.java (new), Configuration.java (new 41), DataTable.java (new 12), Engine1Thread.java (new 100), Engine2Thread.java (new 75), EngineManager.java (new 7), EngineManagerPopupMenu.java (new), GUIPreferences.java (new 5), GuiCfg.java (new 593), InputAdmin.java (new 1), InputListPopupMenu.java (new 1), JMultiLineToolTip.java (new), JarClassLoader.java (new), LoaderTestClass.java (new), MenuCustomizer.java (new), MultiLineCellRenderer.java (new), ParseForHor.java (new), ResultAdmin.java (new 4), ResultListPopupMenu.java (new 218), RunGUI.java (new 3), SaveData.java (new), ScaleDialog.java (new), TablePopupMenu.java (new 2), TestCustomizer.java (new), TestDetailDisplay.java (new), TestParamDialog.java (new), TestThread.java (new 1), TextPaneAppender.java (new), VisualisationThread.java (new 1), WindowMain.java (new 40)
• studioBase/src/de/tum/binfo/proj/input: FlatFile.java (new), IDataFile.java (new 1), IFlatFile.java (new 1), IGenericXMLFile.java (new 1), IInput.java (new 2), IJobTemplate.java (new), IPedant.java (new 1), IPedantWithFilter.java (new 2), ISeqProperties.java (new 1), ISequenceSet.java (new 1), IXMLFile.java (new), Input.java (new), Pedant.java (new), XMLFile.java (new), all.ucd (changed), input.ucd (changed)
• studioBase/src/de/tum/binfo/proj/input/classes: DataFile.java (new 1), Filter.java (new 5), FlatFile.java (new 262), GenericXMLFile.java (new 27), Input.java (new 3), Pedant.java (new 153), PedantFilter.java (new 18), PedantWithFilter.java (new 4), SeqProperties.java (new), SequenceSet.java (new), classes-i.ucd (changed)
• studioBase/src/de/tum/binfo/proj/input/filter: IFilter.java (new), IFilterAble.java (new), IPedantFilter.java (new 1)
• studioBase/src/de/tum/binfo/proj/rinterface: RParser.java (new 2), RPiper.java (new 1), Rtest.java (new 2)
• studioBase/src/de/tum/binfo/proj/scales: GenericScale.java (new), Ges.java (new), HphobJanin.java (new), HphobKyteDoolite.java (new), HphobRose.java (new), None.java (new), Scale.java (new), We1.java (new), We2.java (new), We3.java (new), We4.java (new), We5.java (new), We6.java (new), We7.java (new)
• studioBase/src/de/tum/binfo/proj/statistic: Ansari.java (new 1), Bartlett.java (new 1), Binom.java (new 1), Box.java (new 1), ChiSq.java (new 1), Fisher.java (new 1), Fligner.java (new 1), Friedman.java (new 1), ITest.java (new), KS.java (new 1), Kruskal.java (new 1), MannWhitney.java (new 8), MantelHaen.java (new 1), McNemar.java (new 1), Mood.java (new 1), OneWay.java (new 1), PP.java (new 1), PairwiseProp.java (new 1), PairwiseTTest.java (new 1), PairwiseWilcox.java (new 1), PearsonCorTest.java (new 1), PowerTTest.java (new 1), Prop.java (new 1), PropTrend.java (new 1), Quade.java (new 1), ShapiroTest.java (new 1), TTest.java (new 1), Test.java (new 3), Wilcoxon.java (new 1)
• studioBase/src/de/tum/binfo/proj/statistic/ext: Compare2Distributions.java (new 18), MannWhitneyApp.java (new), ShapiroTestApp.java (new 1), TTestApp.java (new 1)
• studioBase/src/de/tum/binfo/proj/statistic/pdef: Checkbox.java (new 1), Radiobutton.java (new 1), Spinner.java (new 1), Textarea.java (new 1), Textfield.java (new 1)
• studioBase/src/de/tum/binfo/proj/ui: AaDialog.java (new 1), DialogFactory.java (new 1), FileFilter.java (new)
• studioBase/src/de/tum/binfo/proj/util: AddSeq.java (new), Analyzer.java (new 1), CheckIds.java (new), CustomTableModel.java (new), Db.java (new 160), DbImport.java (new 65), DynamicLoading.java (new 30), FindPedantDbs.java (new 4), IconTableCellRenderer.java (new), ImportTester.java (new), JarReader.java (new), NonEditableTableModel.java (new), QueryExpasyForTaxonomy.java (new), Routines.java (new), StringCompare.java (new), StringUtils.java (new 1), SwissProtConnection.java (new), Tools.java (new)
• studioBase/src/de/tum/binfo/proj/util/exception: RException.java (new)
• studioBase/src/de/tum/binfo/proj/visualisation: AaDistributionBoxPlot.java (new 2), AaDistributionHistogram.java (new 1), AaFrequencesDiffPlot.java (new 1), AaFrequencesPlot.java (new 3), AaStripChart.java (new 1), IVisualisation.java (new), LengthAgainstHyphobPlot.java (new 2), PIComparePlot.java (new 11), ScopVisualisation.java (new 3), Viewer.java (new 2), ViewerPopupMenu.java (new 337), Visualisation.java (new 2)

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